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| - In A Tale of Ninetales, Porygon was accidentally traded to Red, but he and Blue traded back when they met up again.
- Poli is Red's first caught Pokémon. Red caught it while it was still a Poliwag. It evolved into Poliwhirl to save Red from drowning as a little kid. It evolved once more when Lt. Surge threw Red into the Vermilion Bay. Poliwhirl came in contact with the legendary Water Stone and was able to save Red and defeat Lt. Surge.
- Aero is the last Pokémon of Red's main Party and his main form of air transportation. Red was given an Old Amber from Team Rocket Boss and Leader Giovanni, not knowing is trainer classes. During a scuffle with Team Rocket on Cinnabar Island, scientist Blaine told Red to take his Old Amber to the Resurrection Chamber; Red did as he was told and as a result, resurrected Aero. Aero was able to fend off Moltres and save Blaine and Red's Gyara. Much later during the FireRed & LeafGreen arc, Aero was traded to Blue for his Charizard, due to Aero being unable to fly after having his wings pierced by Deoxys.
- Pika is Red's partner and the Pokémon he relies on the most. Red caught Pika in Pewter City after Pika was causing mayhem in the city. Like Ash's Pikachu, Pika was not too happy with his trainer in the beginning, but when Red saved him at risk to his own health during their battle with Leader Brock, he changed his view of Red. Later during Pika's travels with Yellow, it was able to morph its Substitute into a surf board to Surf. During those travels, Red replaced his empty party slot with Vee. During the Gold, Silver & Crystal arc, Pika was revealed to have sired an egg with Yellow's Pikachu, ChuChu, and hatched as a Pichu under the ownership of Gold.
- These Weepinbells first appeared in A Hollow Victreebel. Red caught them while he was in the Safari Zone.
- Fearow first appeared in Chapter 9 "...But Fearow Itself". Fearow tried to carry off Bill after he turned himself into a Rattata. Red battled and caught Fearow to save Bill.
- These Exeggcutes first appeared in A Hollow Victreebel. Red caught them while he was in the Safari Zone.
- Snor in the was caught on Route 12 due to it obstructed the path of the Bicycle Race from Vermilion to Lavender. Snorlax awoke to Red and the honey-drenched Saur, getting up and chasing them all the way to Lavender Town which won Red the race and the prize money, but he spent all of it feeding Snor.
- In A Tale of Ninetales, Golduck was accidentally traded to Red, but he and Blue traded back when they met up again.
- Bellsprout was seen being caught in a flashback in ...But Fearow Itself!. He later caught 5 more Bellsprouts in A Hollow Victreebel. Red caught these five while he was in the Safari Zone.
- Krabby first appeared in A Tale of Ninetales. It was caught using Blue's Pokémon team after they accidentally traded their teams. Krabby was used to battle the Eevee that had escaped from Team Rocket, but was easily taken out after Eevee evolved into Jolteon. He later used it with Poliwrath to search for the HM Surf. He later traded Krabby to Misty for her Gyarados.
- Red and Mewtwo battled Silver's father and Deoxys on the Team Rocket's ship
- Gyara was a Team Rocket experiment and Leader Misty's Pokémon. Eventually it either was released or escaped and Misty caught up to it on Route 3 and engaged it in battle but to no avail. Later Red and Saur showed up to help. Gyara was eventually recaptured by Red and returned to Misty. Misty later traded Gyara for Red's Krabby. Once on Seafoam Islands, Gyara regressed to an uncontrollable state due to its deep hatred for the Rockets. Red with the help of the rest of his party were able to calm him down. Leader Blaine requested the use of Gyara from Red while Red used to the Resurrection chamber of his own Old Amber.
- These Victreebels first appeared in Long Live the Nidoking!. Red caught both Victreebels in the Safari Zone. He used one of the Victreebels to battle a Nidoking while in the Safari Zone.
- Machamp was originally a Machoke, and was accidentally transferred to Red's party after a mix-up, whereupon it evolved due to the trade. Red traded Machamp back to Blue after they met up again.
- Nidoqueen first appeared in Long Live the Nidoking!. Red caught it in the Safari Zone. He accidentally caught Nidoqueen while trying to catch a Nidoking.
- These Nidokings first appeared in Long Live the Nidoking!. Red caught these Nidokings in the Safari Zone.
- In A Tale of Ninetales, Charmeleon was accidentally traded to Red, but he and Blue traded back when they met up again. He later traded his Gyarados for Blue's Charizard, so it could take him to a hidden hot spring on Mt. Silver to recover from his battle with Lorelei. After the threat of Neo Team Rocket was removed he traded back to Blue.
- In A Tale of Ninetales, Pidgeot was accidentally traded to Red, but he and Blue traded back when they met up again.
- Sandshrew first appeared in Make Way For Magmar! He used Sandshrew to battle two Magmars that were setting fire to the Pewter City Museum of Science.
- At some point during the Gold & Silver arc, Green traded her Blastoise to Red. After the battle with Lugia and Ho-Oh, he traded Blastoise back to Green.
- Saur is Red's starter Pokémon. He accidentally released him as Bulbasaur from Professor Oak's lab. When Oak saw how well Red battled with Bulbasaur, Professor Oak gave him Bulbasaur and a Pokédex. Saur evolved into Ivysaur shortly before meeting Green. He evolved once more to its final stage during Red's battle again Team Rocket's Sabrina.
- In A Tale of Ninetales, Scyther was accidentally traded to Red, but he and Blue traded back when they met up again.
- Red caught Nidorino when he was showing three trainers how to catch a Pokémon.
- These Parasects first appeared in A Hollow Victreebel. Red caught them while he was in the Safari Zone.
- Diglett first appeared in A Tale of Ninetales.It was caught using Blue's Pokémon team after they accidentally traded their teams. He used it to battle the Eevee that had escaped from Team Rocket after it had defeated his Krabby. It was easily defeated after Eevee changed into Vaporeon.
- Vee was orginally an Eevee that had escaped from Team Rocket. It had been genetically altered so that it could evolve into Jolteon, Flareon, or Vaporeon without the use of a stone. It could also return to it's original form at will. The data Team Rocket gained from the experiment was used to create the device that was used to fuse Moltres, Zapdos, and Articuno together. After it evolved into Espeon, it lost the ability to change back into an Eevee.
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