Char
| - Ruby, Sapphire, Emerald, Steven Stone, Mr. Stone, Zinnia, Mr. Briney, Drake, Ultima, Gabby, Ty, Editor-in-chief
;Characters appearing in flashbacks:
Jinga, Toma-Toma, Renza, Amber
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pchar
| - Ruby's Swampert, Ruby's Gardevoir, Mega Latios, Sapphire's Mega Blaziken, Plusle, Minun, Emerald's Mega Sceptile, Emerald's Dusclops, Emerald's Sudowoodo, Steven's Metagross ↔ Mega Metagross, Drake's Shelgon, Peeko, Absol, Hoopa , Team Magma's Numel, Team Magma's Koffing, Team Aqua's Carvanha, Team Aqua's Grimer, Zinnia's Goodra, Zinnea's Whismur, Editor-in-chief's Spinda
;Pokémon appearing in flashbacks:
Toma-Toma's Flygon, Renza's Flygon, Jinga's Flygon, Rayquaza
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