About: Pulling Structure Through   Sponge Permalink

An Entity of Type : owl:Thing, within Data Space : 134.155.108.49:8890 associated with source dataset(s)

First, freeze the entire protein and unfreeze only the structure and any adjacent loops that you want to move. Always be sure there is room enough to land where you want your section to go. Make sure that there is also enough length in the adjacent loops to stretch far enough to get your section to where you want it to land.

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  • Pulling Structure Through
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  • First, freeze the entire protein and unfreeze only the structure and any adjacent loops that you want to move. Always be sure there is room enough to land where you want your section to go. Make sure that there is also enough length in the adjacent loops to stretch far enough to get your section to where you want it to land.
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abstract
  • First, freeze the entire protein and unfreeze only the structure and any adjacent loops that you want to move. Always be sure there is room enough to land where you want your section to go. Make sure that there is also enough length in the adjacent loops to stretch far enough to get your section to where you want it to land. Next, place bands to pull the unfrozen section through the rest of the frozen protein to where you want it to land. Then run a rebuild of the unfrozen section. As the rebuild runs this section should pass though to where your bands pull it. The structure will not go any further then you can stretch the adjacent loops. Caution: you can very easily get stuck in the middle of some other part of your protein if the adjacent loops aren't long enough or your bands are misplaced.
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