The Pequod was a Mark III Zion hovercraft. The ship was on a rescue mission to save Rocket, a crew member jacked in aboard the Mariner after all of the other crew members had died. However they don't manage to save him. Pequod was destroyed in a Sentinel attack as Flint wanted to go to the surface and collect artifacts of human history before the Machine War. The only surviving member is its captain Flint, who did not manage to load the EMP.