The storyline in this graphic novel follows the same as the book, and starts out with a prologue, revealing the story behind how Artemis Fowl I was captured by the Russian Mafiya's henchmen, which sank Fowl Star, Artemis Fowl I's ship which were full of Cola he was going to sell to keep the Fowl family's fortune. Down the in The Lower Elements, the Goblins are going crazy, because a war between the Dwarf and Goblin gangs have begun.